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CICS time stamps its messages. See previous comment as regards Liberty produced messages.
The output seen in the provided stdout attachment is produced by Liberty (rather than CICS) and is a console replication of Liberty's actual message.log. It is typically used when a short-lived manually controlled Liberty server is run from the command-line. For a fully time-stamped output in a CICS environment, the customer should refer to Liberty's message.log instead (typically .../wlp/usr/servers/defaultServer/logs/message.log).
Perhaps the customer had hoped that the console replica would include time-stamps? it doesn't because it wasn't designed by Liberty as a log. Customer should use message.log instead to see time-stamps.
The output in stderr is also output from Liberty and not under CICS control. However, the same error will be written to the message.log along with ffdc files (where it would all be appropriately time-stamped).
It is also worth note that Liberty 8.5.5.8 introduced logging of some key Liberty messages application lifecycle msgs to the syslog, which will appear in the CICS job log with timestamps and there is an open liberty requirement to make this list configurable. - see http://www.ibm.com/developerworks/rfe/execute?use_case=viewChangeRequest&CR_ID=85364
Please could we have some more information as to which messages you are referring to?
All JVM server 'messages' go to CICS and are timestamped. Only trace goes to zFS and the JVM trace (dfhjvmtrc on zFS) is fully timestamped.
As far as STDOUT is concerned, this is for user messages only (not CICS) and so user code would have to do their own timestamping for their own messages.
As far as STDERR is concerned, this is made up of:
a) 'raw output' from the JVM that we don't control and can't timestamp
b) output from CICS Java, which is already timestamped
c) output from CICS C code, which we don't timestamp (and could) but the entries are very rare